PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006394-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 556aa    MW: 62926 Da    PI: 7.5099
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006394-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1509.9e-1668135172
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                            +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g+r +++++     ++r+  +t+Cka++++kk+k
  SMil_00006394-RA_Salv  68 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSRPQSSTS----ISQRPCAKTDCKASMHIKKRK 135
                            5****************************************998877....999***************994 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1368136IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.939261297IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-6261294IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-5272299IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEIDLELPSL DIRNNDGGIG NEEIVADNEI MGDEDGVNLK VLSDNRGRVE SYMPQNGMEF  60
ETKEAAYSFY REYARSVGFG ITIKASRRSK KSGKFIDIKI ACSRFGSRPQ SSTSISQRPC  120
AKTDCKASMH IKKRKWVPTY MREVFLGGFC TVERSQSVVS FFDKYLQKET RFHEFIDQYK  180
LFLRECCEQE VKAEVETRSS GPILISHSPF EKQMSKLYTN DIFKKFQAEV SGTLSCTPEK  240
EGEDEETIVY RVYDLERKQS FTVSWSKGIY GIYCLCRLFE YSGFLCRHSL SVLQLSSIST  300
IPSNYILKRW TRAAKIIDIP QASASTNFRV QRLNDICKLS IKVGEEGSIS EEAYKVAYHA  360
LEEAMEHCAR LNYSAKSILE TTKTAAHGLL DVGQNKDKSI AKASKTKVPK KRKVRAEPET  420
VLSTGMEESS QDVEQLNRQS HRLHDSYISQ QDFQGVEPEL RNPIVNGYSG AEHGGPGHLS  480
SLSSLQDCYY NDQSLMQGVL GNFSARVSHH ATQQNLHALL QGQFSFRPLS LEGCSQLRDS  540
LQNENSVSMM SKHLHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406412KVPKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093711.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBLA0A022QJ501e-121A0A022QJ50_ERYGU; Uncharacterized protein (Fragment)
TrEMBLF6HTN21e-118F6HTN2_VITVI; Putative uncharacterized protein
STRINGVIT_03s0017g01830.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-81far-red elongated hypocotyls 3